Immuno-Oncology

Biomarkers for immuno-oncology

The field of immuno-oncology is based on decades of research into how tumors have acquired mechanisms to circumvent and evade elimination by the immune system. By intervening with the ability of tumors to escape the immune system and by re-activating and re-directing immune cells in the tumor microenvironment, immuno-oncology therapies enable the body’s own defense system to recognize and eliminate the tumor.

One essential characteristic of patients benefitting from immuno-oncology therapies such as checkpoint inhibitors is that their T-cells are present and/or recruited to the tumor. That is, if T-cells are not homing to the tumor, treatment will have a poor effect. Therefore, it is important to identify patients with a T-cell permissive tumor microenvironment.

Analysis of the tumor microenvironment in patients with a variety of solid tumors has revealed that patients can be divided into phenotypes based on T-cell infiltration: tumors with T-cell infiltration (“hot tumors”/”inflamed tumors”) and tumors without T-cell infiltration (“cold tumors”/”excluded tumors”).

Interestingly, it has been shown that T-cells are actively degrading the basement membrane extracellular matrix when transmigrating from the blood and into the tumor, and the architecture of the extracellular matrix defines the localization and migration of T-cells within the tumor with T-cells being entrapped in the dense interstitial extracellular matrix and therefore cannot reach and kill the tumor cells.

Predicting response to checkpoint inhibitors

By combining the serological assessment of a biomarker related to tumor fibrosis PRO-C3 (nordicPRO-C3™)) with the serological assessment of a biomarker related to active T-cell infiltration in the tumor microenvironment (C4G), it is possible to identify in our CAP-accredited lab the fraction of patients with benefit from checkpoint inhibitor therapy from the periphery.

C4G is granzyme B degraded type IV collagen, measuring T-cell infiltration. Activated T-cells release the protease granzyme B (GzB), which can cleave type IV collagen during tumor infiltration. In other words, GzB promotes T-cell transmigration via basement membrane remodeling. Nordic Bioscience has identified GzB-specific cleavage sites on type IV collagen by mass spectrometry and developed an assay (C4G) with the ability to predict response and outcome in cancer patients treated with checkpoint inhibitors. C4G has been validated in several indications, with other immuno-oncology modalities and in other disease areas.

NordicPRO-C3™ is the pro-peptide of type III collagen quantifying tumor fibrosis (desmoplasia). While chemo- and targeted therapies have prevailed in the treatment of solid tumors, immuno-oncology therapies such as checkpoint inhibitors have revolutionized the field by inducing durable long-term responses in cancer patients. However, despite the substantially extended clinical benefit experienced by some patients, a large percentage of patients included in these clinical trials do not respond to treatment and are left with few, if any, other treatment options.

Cancer-associated fibroblasts (CAFs) are the main drivers of the increased extracellular matrix and collagen deposition leading to tumor fibrosis (desmoplasia). Consequent to the impact of desmoplasia on efficient infiltration and activity of T-cells in the tumor, tools to measure and quantify the desmoplastic reaction have great applicability in the immuno-oncology setting. NordicPRO-C3™ an assay developed by Nordic Bioscience for measuring true formation of fibroblast-derived collagen has shown to predict response and outcome in cancer patients treated with checkpoint inhibitors. NordicPRO-C3™ is also validated in several indications, with other modalities and in other disease areas.

Pharmacodynamic modulation and mode-of-action

It is well established that immuno-oncology therapies can have a great impact on the composition and quality of the cells of the tumor microenvironment and therefore also on the composition and quality of the extracellular matrix and the Nordic ProteinFingerPrint Technology™ biomarkers. This potentially allow pharmacodynamic profiling of novel treatments by measuring these biomarkers directly in serum/plasma samples over the course of an immuno-oncology clinical trial. Likewise, these biomarkers may enlighten on the mode-of-action of a given immuno-oncology compound alone or in combinations.

VICM is matrix metalloprotease degraded, citrullinated vimentin (Macrophage activity). Tumor-associated macrophages (TAMs) are the dominant leukocyte population found in the tumor microenvironment where they are key mediators in maintaining the inflammatory processes in the tumor. Monitoring how macrophage activity is affected by a given immuno-oncology treatment may shed light on the MoA. The protein fragment VICM (matrix metalloprotease degraded and citrullinated vimentin) has been shown to be released from activated macrophages and dose-dependently decreased by anti-GM-CSFRα therapy. Moreover, changes in the VICM biomarker are linked to response to checkpoint blockade supporting a link between immuno-oncology therapy and TAM activity.

The clinical need for non-invasive biomarkers and why neo-epitopes matter in immuno-oncology

Immuno-oncology treatment response relies on complex interactions between tumor cells, the stromal cells (immune cells, fibroblasts etc.), soluble factors (TGF-beta) and the extracellular matrix. This entails a need for biomarkers reflecting such tumor microenvironment alterations. Many immuno-oncology-related biomarkers currently being evaluated for predicting and monitoring response are based on fresh tissue biopsies which, for one, are often not obtainable, but also suffer from heterogeneity due to “sampling error” and lack of reflection on the dynamic component of such tumor microenvironment alterations. Therefore, peripheral biomarkers (liquid biopsies) in the setting of IO therapies are urgently needed.

Proteins are constantly being produced, degraded and modified as part of maintaining healthy tissue. However, these processes become uncontrolled in the tumor microenvironment. Ultimately, all these activity changes in the tumor microenvironment manifest in alterations in the quality and composition of the extracellular matrix. Compared to genomics and IHC, looking at specific neo-epitopes on extracellular matrix proteins associated with given pathophysiological processes will provide a higher correlation with actual disease activity and immuno-oncological processes.

At Nordic Bioscience we focus our biomarker efforts on targeting and quantifying post-translational modifications, cleavage sites, and neo-epitopes on proteins or peptide fragments in circulation. We call these protein fingerprints. This approach is in fundamental contrast to most precision medicine approaches in the immuno-oncology space where the primary focus is on genomics and staining of total protein content by immunohistochemistry. Quantifying unique neo-epitopes on circulating peptides originating from the same protein may provide the complete opposite prognostic value.

About immuno-oncology (IO)

  • Biomarkers in immuno-oncology are measurable indicators in blood or tissue that reflect the immune system’s interaction with cancer. They are important for identifying which patients are likely to respond to immunotherapies, such as checkpoint inhibitors, and for monitoring treatment response and disease progression.

  • Biomarkers like nordicPRO-C3™ and C4G can identify patients with a T-cell-permissive tumor microenvironment. C4G reflects active T-cell infiltration, while nordicPRO-C3™ measures tumor fibrosis. Together, they help predict which patients are more likely to benefit from checkpoint inhibitor therapy.

  • Macrophages and fibroblasts are key components of the tumor stroma. Biomarkers like VICM track macrophage activity, while nordicPRO-C3™ reflects fibroblast-driven collagen formation. These indicators provide insight into immune activity, fibrosis, and potential resistance mechanisms to immunotherapy.

  • Non-invasive, blood-based biomarkers overcome the limitations of tumor biopsies, which may be unavailable or unrepresentative. Liquid biopsies allow for real-time monitoring of treatment effects and tumor microenvironment changes without repeated invasive procedures.

  • Nordic ProteinFingerPrint Technology™ targets specific protein fragments, known as neo-epitopes, that result from active disease processes like ECM remodeling. This approach offers higher biological relevance and accuracy in capturing real-time immune and fibrotic activity compared to traditional genomic or histological methods.

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